All Disease High Throughput Experiments > Disease Large Scale Dataset Card

Large Scale Dataset: Cancer Data from 'The Gene Expression Barcode 3.0'

This dataset contains gene expression comparisons between cancerous tissues and their matched normal tissues. All samples were taken from the ‘The Gene Expression Barcode 3.0’ transcriptomes for affymetrix platforms HGU133plus2 (Human) v2 (GPL570) and HGU133plus2 (Human) v3 (GPL96). All cancerous samples that had matched normal control samples were identified within these transcriptomes and their normalized data were downloaded from GEO. 

Differentially expressed genes were calculated using the eBayseian analysis method.  Only genes with p-value <0.05 and an expression fold change of at least 2, were considered differentially expressed. Up to 200 up- and 200 down-regulated genes are presented for each sample.

Breast Cancer| Cervical Cancer| Cervical Squamous Cell Carcinoma| Chromophobe Renal Cell Carcinoma| Colorectal Adenoma| Colorectal Cancer| Lung Cancer Susceptibility 3| Renal Cell Carcinoma, Nonpapillary| Renal Cell Carcinoma, Papillary, 1| Renal Oncocytoma| Squamous Cell Carcinoma, Head and Neck| Tongue Squamous Cell Carcinoma| Wilms Tumor 5
Microarray Analysis
Blood, Breast, Colon, Head Mesenchyme, Kidney, Lung, Oral Cavity, Uterus
In Vivo
Large Scale Dataset: Cancer Data from 'The Gene Expression Barcode 3.0'